PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA36G00050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YB
Protein Properties Length: 359aa    MW: 39495.9 Da    PI: 4.6971
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA36G00050genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB96.52.3e-3034135393
       NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse...........asdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                 e+dr+lP  nv+rim+  lP +aki + ake + + vsefi  +tse           a+ kcq++k+kt++gddll++++t+Gfe+y+epl++yl++y
  AA36G00050  34 EKDRLLPKINVTRIMRDCLPPKAKIFQGAKEAMVQYVSEFIHCITSEfdcvvhivtsrAAYKCQKDKKKTLDGDDLLMSMSTFGFENYIEPLQIYLQRY 132
                 89**************************************976655444443333333999************************************** PP

       NF-YB  91 rel 93 
                 re 
  AA36G00050 133 REK 135
                 *95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.0E-3330156IPR009072Histone-fold
SuperFamilySSF471134.97E-2336149IPR009072Histone-fold
PfamPF008089.5E-1138113IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-696114No hitNo description
PRINTSPR006151.2E-6115133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MADSKGTPSG MNPEGDEPHE GDEDQTPGSV NDGEKDRLLP KINVTRIMRD CLPPKAKIFQ  60
GAKEAMVQYV SEFIHCITSE FDCVVHIVTS RAAYKCQKDK KKTLDGDDLL MSMSTFGFEN  120
YIEPLQIYLQ RYREKSYVQQ NQAPQVSQPA DQSSGSQVLN ENSQFSEPIP QISFSQGPYE  180
NPQLLQPAQG CSSSQAPYGD PQVYQPSHQS SSSQVPNENY QVSQPVHPSY FPQDPYGVPQ  240
FSEPIPQIPF SQGPYGNPQF SQSAHPSYFP QDPYATPQFC QPAEQSSFLQ GSSGNSQFSQ  300
PAQQSSSSQV PNENSQFQCH LQNSSSSSSS RTSSSSSSSS FSSSSSSSSL SSSSYEKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B1e-2434134392Transcription factor HapC (Eurofung)
4g91_B1e-2434134392Transcription factor HapC (Eurofung)
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-27nuclear factor Y, subunit B10